Download plexDIA data

plexDIA Data plexDIA @ massIVE plexDIA code

plexDIA data organized by experiments

All RAW and processed data from the plexDIA article are organized in this directory. Below are links to processed data from single cells, cells isolated based in DNA content (cell cycle phases) and from LFQ-bench style benchmarking experiments.

• Processed single-cell data

• Proteins x single cells data matrix

• Processed cell division cycle data

• Processed benchmarking data

plexDIA RAW data and search results from DIA-NN

The repositories below contain RAW mass-spectrometry data files generated by a first-generation Q-exactive instrument as well as the search results from analyzing the RAW files by DIA-NN. Searching plexDIA data with DIA-NN is described in this tutorial.

• MassIVE Repository for version 1 (Bulk plexDIA data):
  • http: MSV000088302
  • ftp:   MSV000088302
• MassIVE Repository for version 2 (Bulk and single-cell plexDIA data):
  • http: MSV000089093
  • ftp:   MSV000089093