Analyzing plexDIA data
A pipeline for analyzing plexDIA data and reproducing the analysis by Derks et al are available at the plexDIA GitHub repository.
Searching plexDIA data
Searching plexDIA data with DIA-NN is described in this tutorial.
Detailed methods can be found at:
Derks, J., Leduc, A., Wallmann, G. et al. Increasing the throughput of sensitive proteomics by plexDIA. Nat Biotechnol (2022). 10.1038/s41587-022-01389-w, Preprint